Class DefaultAAIndexProvider
- java.lang.Object
-
- org.biojava.nbio.core.alignment.matrices.DefaultAAIndexProvider
-
- All Implemented Interfaces:
AAIndexProvider
public class DefaultAAIndexProvider extends java.lang.Object implements AAIndexProvider
The default provider for AAINDEX loads substitution matrices from the AAINDEX file in the resources directory- Author:
- Andreas Prlic
-
-
Constructor Summary
Constructors Constructor Description DefaultAAIndexProvider()
-
Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description java.io.InputStream
getInputStreamToAAindexFile()
SubstitutionMatrix<AminoAcidCompound>
getMatrix(java.lang.String matrixName)
-
-
-
Method Detail
-
getMatrix
public SubstitutionMatrix<AminoAcidCompound> getMatrix(java.lang.String matrixName)
- Specified by:
getMatrix
in interfaceAAIndexProvider
-
getInputStreamToAAindexFile
public java.io.InputStream getInputStreamToAAindexFile()
-
-