Package org.biojava.nbio.ws.hmmer
Class RemoteHmmerScan
- java.lang.Object
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- org.biojava.nbio.ws.hmmer.RemoteHmmerScan
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Field Summary
Fields Modifier and Type Field Description static java.lang.String
HMMER_SERVICE
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Constructor Summary
Constructors Constructor Description RemoteHmmerScan()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description java.util.SortedSet<HmmerResult>
scan(ProteinSequence sequence)
java.util.SortedSet<HmmerResult>
scan(ProteinSequence sequence, java.net.URL serviceLocation)
Scans a protein sequence for Pfam profile matches.
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Field Detail
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HMMER_SERVICE
public static final java.lang.String HMMER_SERVICE
- See Also:
- Constant Field Values
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Method Detail
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scan
public java.util.SortedSet<HmmerResult> scan(ProteinSequence sequence) throws java.io.IOException
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scan
public java.util.SortedSet<HmmerResult> scan(ProteinSequence sequence, java.net.URL serviceLocation) throws java.io.IOException
Scans a protein sequence for Pfam profile matches.- Parameters:
sequence
-serviceLocation
-- Returns:
- Throws:
java.io.IOException
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