Class DBReferenceInfo
- java.lang.Object
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- org.biojava.nbio.core.sequence.features.Qualifier
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- org.biojava.nbio.core.sequence.features.DBReferenceInfo
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- Direct Known Subclasses:
FeatureDbReferenceInfo
public class DBReferenceInfo extends Qualifier
If you have a uniprot ID then it is possible to get a collection of other id(s) that the protein is known by. This is a place holder for the alternative source database and the id for the same protein. Currently implement when theUniprotProxySequenceReader
is used to load a protein sequence- Author:
- Scooter Willis
, Paolo Pavan
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Constructor Summary
Constructors Constructor Description DBReferenceInfo(java.lang.String database, java.lang.String id)
The source database and id
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
addProperty(java.lang.String type, java.lang.String value)
Add a property and type to associate with this DBReferenceInfojava.lang.String
getDatabase()
java.lang.String
getId()
java.util.LinkedHashMap<java.lang.String,java.lang.String>
getProperties()
Get the propertiesvoid
setDatabase(java.lang.String database)
void
setId(java.lang.String id)
void
setProperties(java.util.LinkedHashMap<java.lang.String,java.lang.String> properties)
java.lang.String
toString()
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Methods inherited from class org.biojava.nbio.core.sequence.features.Qualifier
getName, getValue, needsQuotes, setName, setNeedsQuotes, setValue
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Method Detail
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addProperty
public void addProperty(java.lang.String type, java.lang.String value)
Add a property and type to associate with this DBReferenceInfo- Parameters:
type
-value
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getProperties
public java.util.LinkedHashMap<java.lang.String,java.lang.String> getProperties()
Get the properties- Returns:
- the properties
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setProperties
public void setProperties(java.util.LinkedHashMap<java.lang.String,java.lang.String> properties)
- Parameters:
properties
- the properties to set
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getDatabase
public java.lang.String getDatabase()
- Returns:
- the database
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setDatabase
public void setDatabase(java.lang.String database)
- Parameters:
database
- the database to set
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getId
public java.lang.String getId()
- Returns:
- the id
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setId
public void setId(java.lang.String id)
- Parameters:
id
- the id to set
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