Class MultipleAlignmentDisplay


  • public class MultipleAlignmentDisplay
    extends java.lang.Object
    Utility functions to generalize the visualization of MultipleAlignments in molecular viewers. The methods return different types of selectors for the aligned residues in the alignment.
    Since:
    4.2.0
    Author:
    Andreas Prlic, Aleix Lafita, Spencer Bliven
    • Method Summary

      All Methods Static Methods Concrete Methods 
      Modifier and Type Method Description
      static java.util.List<Atom[]> getRotatedAtoms​(MultipleAlignment multAln)
      New structures are downloaded if they were not cached in the alignment and they are entirely transformed here with the superposition information in the Multiple Alignment.
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • MultipleAlignmentDisplay

        public MultipleAlignmentDisplay()
    • Method Detail

      • getRotatedAtoms

        public static java.util.List<Atom[]> getRotatedAtoms​(MultipleAlignment multAln)
                                                      throws StructureException
        New structures are downloaded if they were not cached in the alignment and they are entirely transformed here with the superposition information in the Multiple Alignment.
        Parameters:
        multAln -
        Returns:
        list of transformed AtomArrays
        Throws:
        StructureException