Class BlastClustReader
- java.lang.Object
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- org.biojava.nbio.structure.symmetry.utils.BlastClustReader
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- All Implemented Interfaces:
java.io.Serializable
public class BlastClustReader extends java.lang.Object implements java.io.Serializable
- See Also:
- Serialized Form
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Constructor Summary
Constructors Constructor Description BlastClustReader(int sequenceIdentity)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description java.util.List<java.util.List<java.lang.String>>
getChainIdsInEntry(java.lang.String pdbId)
java.util.List<java.util.List<java.lang.String>>
getPdbChainIdClusters()
java.util.List<java.util.List<java.lang.String>>
getPdbChainIdClusters(java.lang.String pdbId)
java.lang.String
getRepresentativeChain(java.lang.String pdbId, java.lang.String chainId)
java.util.Map<java.lang.String,java.lang.String>
getRepresentatives(java.lang.String pdbId)
int
indexOf(java.lang.String pdbId, java.lang.String chainId)
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Method Detail
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getPdbChainIdClusters
public java.util.List<java.util.List<java.lang.String>> getPdbChainIdClusters()
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getRepresentatives
public java.util.Map<java.lang.String,java.lang.String> getRepresentatives(java.lang.String pdbId)
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getRepresentativeChain
public java.lang.String getRepresentativeChain(java.lang.String pdbId, java.lang.String chainId)
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indexOf
public int indexOf(java.lang.String pdbId, java.lang.String chainId)
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getPdbChainIdClusters
public java.util.List<java.util.List<java.lang.String>> getPdbChainIdClusters(java.lang.String pdbId)
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getChainIdsInEntry
public java.util.List<java.util.List<java.lang.String>> getChainIdsInEntry(java.lang.String pdbId)
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