Class GeneChromosomePositionParser
- java.lang.Object
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- org.biojava.nbio.genome.parsers.genename.GeneChromosomePositionParser
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public class GeneChromosomePositionParser extends java.lang.Object
A parser that parses a file from the UCSC genome browser that contains mapping of gene name to chromosome positions- Author:
- Andreas Prlic
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Field Summary
Fields Modifier and Type Field Description static java.lang.String
DEFAULT_MAPPING_URL
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Constructor Summary
Constructors Constructor Description GeneChromosomePositionParser()
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Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static java.util.List<GeneChromosomePosition>
getChromosomeMappings()
static java.util.List<GeneChromosomePosition>
getChromosomeMappings(java.io.InputStream inStream)
static void
main(java.lang.String[] args)
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Field Detail
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DEFAULT_MAPPING_URL
public static final java.lang.String DEFAULT_MAPPING_URL
- See Also:
- Constant Field Values
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Method Detail
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main
public static void main(java.lang.String[] args)
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getChromosomeMappings
public static java.util.List<GeneChromosomePosition> getChromosomeMappings() throws java.io.IOException
- Throws:
java.io.IOException
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getChromosomeMappings
public static java.util.List<GeneChromosomePosition> getChromosomeMappings(java.io.InputStream inStream) throws java.io.IOException
- Throws:
java.io.IOException
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