Package org.forester.archaeopteryx
Class TreePanelUtil
- java.lang.Object
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- org.forester.archaeopteryx.TreePanelUtil
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public class TreePanelUtil extends java.lang.Object
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Constructor Summary
Constructors Constructor Description TreePanelUtil()
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Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static java.lang.String
createUriForSeqWeb(PhylogenyNode node, Configuration conf, TreePanel tp)
static java.util.List<java.lang.String>
createUrisForPdbWeb(PhylogenyNode node, java.util.List<Accession> pdb_accs, Configuration configuration, TreePanel treePanel)
static java.util.Set<Taxonomy>
obtainDistinctTaxonomies(PhylogenyNode node)
Returns the set of distinct taxonomies of all external nodes of node.static void
showExtDescNodeDataUserSelectedHelper(org.forester.archaeopteryx.ControlPanel cp, PhylogenyNode node, java.util.List<java.lang.String> data)
static void
showExtDescNodeDataUserSelectedHelperHelper(java.lang.String s, java.lang.StringBuilder sb)
static void
showInformationMessage(java.awt.Component parent, java.lang.String title, java.lang.String msg)
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Method Detail
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createUriForSeqWeb
public static final java.lang.String createUriForSeqWeb(PhylogenyNode node, Configuration conf, TreePanel tp)
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createUrisForPdbWeb
public static java.util.List<java.lang.String> createUrisForPdbWeb(PhylogenyNode node, java.util.List<Accession> pdb_accs, Configuration configuration, TreePanel treePanel)
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obtainDistinctTaxonomies
public static java.util.Set<Taxonomy> obtainDistinctTaxonomies(PhylogenyNode node)
Returns the set of distinct taxonomies of all external nodes of node. If at least one the external nodes has no taxonomy, null is returned.
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showExtDescNodeDataUserSelectedHelper
public static final void showExtDescNodeDataUserSelectedHelper(org.forester.archaeopteryx.ControlPanel cp, PhylogenyNode node, java.util.List<java.lang.String> data)
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showExtDescNodeDataUserSelectedHelperHelper
public static final void showExtDescNodeDataUserSelectedHelperHelper(java.lang.String s, java.lang.StringBuilder sb)
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showInformationMessage
public static final void showInformationMessage(java.awt.Component parent, java.lang.String title, java.lang.String msg)
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