gasic for Debian
================

The run_mappers.py script contained code relying on SeQan 1.  This was replaced
by SeQan 2 in Debian which does not contain the executable mason any more. The
original command:

   mason illumina -N 10000 -hi 0 -hs 0 -n 72  -sq -o <out> <ref>

was replaced by 

   mason_simulator illumina --illumina-read-length 10000 -o <out> <ref>

It is not sure whether this provides comparable results.  If you have a better
suggestion please write a bug report via

   reportbug gasic

 -- Andreas Tille <tille@debian.org>  Tue, 08 Oct 2019 15:01:07 +0200
