Uses of Package
jebl.evolution.trees
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Packages that use jebl.evolution.trees Package Description jebl.evolution.align Provides classes and interfaces for pairwise alignment of two sequences.jebl.evolution.coalescent jebl.evolution.io jebl.evolution.parsimony jebl.evolution.treemetrics jebl.evolution.trees jebl.evolution.treesimulation -
Classes in jebl.evolution.trees used by jebl.evolution.align Class Description RootedTree A tree with a root (node with maximum height).Tree A rooted or unrooted tree.TreeBuilderFactory.DistanceModel Supported pairwise distance methodsTreeBuilderFactory.Method Supported methods for tree building -
Classes in jebl.evolution.trees used by jebl.evolution.coalescent Class Description RootedTree A tree with a root (node with maximum height). -
Classes in jebl.evolution.trees used by jebl.evolution.io Class Description Tree A rooted or unrooted tree. -
Classes in jebl.evolution.trees used by jebl.evolution.parsimony Class Description Tree A rooted or unrooted tree. -
Classes in jebl.evolution.trees used by jebl.evolution.treemetrics Class Description RootedTree A tree with a root (node with maximum height). -
Classes in jebl.evolution.trees used by jebl.evolution.trees Class Description CladeSystem Stores a set of unique clades for a treeClusteringTreeBuilder An abstract base class for clustering algorithms from pairwise distancesConsensusTreeBuilder ATreeBuilder
that builds a consensus tree for a set of trees on identical leaf sets.ConsensusTreeBuilder.Method Supported consensus methods.FilteredRootedTree ReRootedTree.RootingType RootedTree A tree with a root (node with maximum height).SortedRootedTree.BranchOrdering SplitSystem data structure for a set of splitsTransformedRootedTree.Transform Tree A rooted or unrooted tree.TreeBiPartitionInfo Work in progressTreeBiPartitionInfo.DistanceNorm TreeBuilder TreeBuilderFactory.ConsensusMethod Supported consensus methods.TreeBuilderFactory.DistanceModel Supported pairwise distance methodsTreeBuilderFactory.Method Supported methods for tree buildingTreeChangeEvent Represents a change to a tree.TreeSelectionChangeEvent Represents a change to the selected nodes in a tree. -
Classes in jebl.evolution.trees used by jebl.evolution.treesimulation Class Description RootedTree A tree with a root (node with maximum height).