Uses of Class
jebl.evolution.graphs.Graph.NoEdgeException
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Packages that use Graph.NoEdgeException Package Description jebl.evolution.graphs jebl.evolution.trees -
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Uses of Graph.NoEdgeException in jebl.evolution.graphs
Methods in jebl.evolution.graphs that throw Graph.NoEdgeException Modifier and Type Method Description Edge
Graph. getEdge(Node node1, Node node2)
Returns the Edge that connects these two nodesdouble
Graph. getEdgeLength(Node node1, Node node2)
Returns the length of the edge that connects these two nodes -
Uses of Graph.NoEdgeException in jebl.evolution.trees
Methods in jebl.evolution.trees that throw Graph.NoEdgeException Modifier and Type Method Description Node
SimpleRootedTree. createNodes(Tree tree, Node parent, Node child)
Clones the entire tree structure from the given (unrooted) Tree.Edge
CompactRootedTree. getEdge(Node node1, Node node2)
Edge
FilteredRootedTree. getEdge(Node node1, Node node2)
Edge
MutableRootedTree. getEdge(Node node1, Node node2)
Returns the Edge that connects these two nodesEdge
RootedFromUnrooted. getEdge(Node node1, Node node2)
Edge
RootedSubtree. getEdge(Node node1, Node node2)
Returns the Edge that connects these two nodesEdge
SimpleRootedTree. getEdge(Node node1, Node node2)
Returns the Edge that connects these two nodesEdge
SimpleTree. getEdge(Node node1, Node node2)
Returns the Edge that connects these two nodesdouble
CompactRootedTree. getEdgeLength(Node node1, Node node2)
double
FilteredRootedTree. getEdgeLength(Node node1, Node node2)
double
MutableRootedTree. getEdgeLength(Node node1, Node node2)
double
RootedFromUnrooted. getEdgeLength(Node node1, Node node2)
double
RootedSubtree. getEdgeLength(Node node1, Node node2)
double
SimpleRootedTree. getEdgeLength(Node node1, Node node2)
double
SimpleTree. getEdgeLength(Node node1, Node node2)
Constructors in jebl.evolution.trees that throw Graph.NoEdgeException Constructor Description SimpleRootedTree(Tree tree, Node ingroupNode, Node outgroupNode, double ingroupBranchLength)
Make a copy of the given unrooted tree
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