Package picard.illumina.parser
Class Tile
- java.lang.Object
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- picard.illumina.parser.Tile
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public class Tile extends Object
Represents a tile from TileMetricsOut.bin. Stores information on location (lane & tile #, density, number of clusters and the phasing/prephasing values associated with this tile
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Constructor Summary
Constructors Constructor Description Tile(int lane, int tile, float density, float clusters, TilePhasingValue... tilePhasingValues)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description float
getClusterCount()
Returns the number of on this tile.float
getClusterDensity()
Returns the cluster density of this tile, in units of [cluster/mm^2].int
getLaneNumber()
Returns the number of this tile's parent lane.Map<TileTemplateRead,Float>
getPhasingMap()
Map<TileTemplateRead,Float>
getPrePhasingMap()
int
getTileNumber()
Returns the number/name of this tile.
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Constructor Detail
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Tile
public Tile(int lane, int tile, float density, float clusters, TilePhasingValue... tilePhasingValues)
- Parameters:
tilePhasingValues
- Either one or two TilePhasingValues, corresponding to the FIRST and potentially SECOND template reads
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Method Detail
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getLaneNumber
public int getLaneNumber()
Returns the number of this tile's parent lane.
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getTileNumber
public int getTileNumber()
Returns the number/name of this tile.
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getClusterDensity
public float getClusterDensity()
Returns the cluster density of this tile, in units of [cluster/mm^2].
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getClusterCount
public float getClusterCount()
Returns the number of on this tile.
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getPhasingMap
public Map<TileTemplateRead,Float> getPhasingMap()
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getPrePhasingMap
public Map<TileTemplateRead,Float> getPrePhasingMap()
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