Interface BaseCalculator

    • Method Summary

      All Methods Instance Methods Abstract Methods 
      Modifier and Type Method Description
      void addBase​(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset, htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)
      the function by which new loci are "shown" to the calculator
      ErrorMetric getMetric()
      Returns the metric generated by the observed loci
      String getSuffix()
      The suffix that pertains to the implementation of aggregation
    • Method Detail

      • getSuffix

        String getSuffix()
        The suffix that pertains to the implementation of aggregation
      • getMetric

        ErrorMetric getMetric()
        Returns the metric generated by the observed loci
      • addBase

        void addBase​(htsjdk.samtools.util.SamLocusIterator.RecordAndOffset recordAndOffset,
                     htsjdk.samtools.reference.SamLocusAndReferenceIterator.SAMLocusAndReference locusInfo)
        the function by which new loci are "shown" to the calculator