Package picard.illumina.parser
Class FourChannelIntensityData
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- picard.illumina.parser.FourChannelIntensityData
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public class FourChannelIntensityData extends Object
Holds a 4 short values for each cycle of a read. This is used, to store raw intensities, processed intensities, or noise. Note that for Illumina 1.1 and 1.3, these are floating point values, but are truncated to shorts to store here. Indices into the channel arrays are zero-based, i.e. the first cycle is 0.
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Constructor Summary
Constructors Constructor Description FourChannelIntensityData(int numberOfCycles)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description boolean
equals(Object o)
short[]
getA()
short[]
getC()
short[]
getChannel(IntensityChannel channel)
short[]
getG()
short[]
getT()
int
hashCode()
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Method Detail
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getChannel
public short[] getChannel(IntensityChannel channel)
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getA
public short[] getA()
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getC
public short[] getC()
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getG
public short[] getG()
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getT
public short[] getT()
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