Package picard.sam.util
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Interface Summary Interface Description PhysicalLocation Small interface that provides access to the physical location information about a cluster. -
Class Summary Class Description Pair<X extends Comparable<X>,Y extends Comparable<Y>> Simple Pair class.PGTagArgumentCollection Argument Collection which holds parameters common to classes that want to add PG tags to reads in SAM/BAM filesPhysicalLocationInt Small class that provides access to the physical location information about a cluster.PhysicalLocationShort Small class that provides access to the physical location information about a cluster.ReadNameParser Provides access to the physical location information about a cluster.RepresentativeReadIndexer Little struct-like class to hold a record index, the index of the corresponding representative read, and duplicate set size information.