Package picard.fastq
Interface ReadNameEncoder
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- All Known Implementing Classes:
Casava18ReadNameEncoder
,IlluminaReadNameEncoder
public interface ReadNameEncoder
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description String
generateReadName(ClusterData cluster, Integer pairNumber)
Generates a read name string for the provided cluster.
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Method Detail
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generateReadName
String generateReadName(ClusterData cluster, Integer pairNumber)
Generates a read name string for the provided cluster.- Parameters:
cluster
- The cluster whose reads are having its name generatedpairNumber
- 1 if this is the first of the pair, 2 if it is the second, or null if this not a paired read.- Returns:
- The read name
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