25#ifndef CLUSTALO_UPGMA_H
26#define CLUSTALO_UPGMA_H
enum linkage_e linkage_t
Definition muscle_upgma.h:38
void MuscleUpgma2(tree_t *tree, symmatrix_t *distmat, linkage_t linkage, char **names)
Creates a UPGMA in O(N^2) tree from given distmat.
Definition muscle_upgma.c:248
linkage_e
Definition muscle_upgma.h:31
@ LINKAGE_MAX
Definition muscle_upgma.h:34
@ LINKAGE_NEIGHBORJOINING
Definition muscle_upgma.h:35
@ LINKAGE_BIASED
Definition muscle_upgma.h:36
@ LINKAGE_MIN
Definition muscle_upgma.h:32
@ LINKAGE_AVG
Definition muscle_upgma.h:33
symmetric matrix structure
Definition symmatrix.h:48
guide-tree structure
Definition muscle_tree.h:59