26PileUp(
mseq_t *prMSeq, hhalign_para rHhalignPara,
int iClustersize);
30 double *pdSeqWeights,
int iNodeCount,
31 hmm_light *prHMMList,
int iHMMCount,
32 int iProfProfSeparator, hhalign_para rHhalignPara);
double HHalignWrapper(mseq_t *mseq, int *piOrderLR, double *pdSeqWeights, int iNodeCount, hmm_light *prHMMList, int iHMMCount, int iProfProfSeparator, hhalign_para rHhalignPara)
wrapper for hhalign. This is a frontend function to the ported hhalign code.
Definition hhalign_wrapper.c:868
void SetDefaultHhalignPara(hhalign_para *prHhalignPara)
FIXME.
Definition hhalign_wrapper.c:51
double PileUp(mseq_t *prMSeq, hhalign_para rHhalignPara, int iClustersize)
sequentially align (chain) sequences
Definition hhalign_wrapper.c:617
void SanitiseUnknown(mseq_t *mseq)
get rid of unknown residues
Definition hhalign_wrapper.c:99
int PosteriorProbabilities(mseq_t *prMSeq, hmm_light rHMMalignment, hhalign_para rHhalignPara, char *pcPosteriorfile)
PosteriorProbabilities() calculates posterior probabilities of aligning a single sequences on-to an a...
Definition hhalign_wrapper.c:503
structure for storing multiple sequences
Definition seq.h:47