ProteoWizard
PeakFamilyDetectorFT.hpp
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1//
2// $Id$
3//
4//
5// Original author: Darren Kessner <darren@proteowizard.org>
6//
7// Copyright 2008 Spielberg Family Center for Applied Proteomics
8// Cedars-Sinai Medical Center, Los Angeles, California 90048
9//
10// Licensed under the Apache License, Version 2.0 (the "License");
11// you may not use this file except in compliance with the License.
12// You may obtain a copy of the License at
13//
14// http://www.apache.org/licenses/LICENSE-2.0
15//
16// Unless required by applicable law or agreed to in writing, software
17// distributed under the License is distributed on an "AS IS" BASIS,
18// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
19// See the License for the specific language governing permissions and
20// limitations under the License.
21//
22
23
24#ifndef _PEAKFAMILYDETECTORFT_HPP_
25#define _PEAKFAMILYDETECTORFT_HPP_
26
27
31
32
33namespace pwiz {
34namespace analysis {
35
36
37///
38/// FT-specific implementation of PeakFamilyDetector
39///
41{
42 public:
43
45 {
46 std::ostream* log;
48 Config() : log(0) {}
49 };
50
52
53 /// find peak families in a specified array of MZIntensityPair
54 virtual void detect(const MZIntensityPair* begin,
55 const MZIntensityPair* end,
56 std::vector<PeakFamily>& result);
57
58 /// FT-specific exception
59 struct NoDataException : public std::runtime_error
60 {
61 NoDataException() : std::runtime_error("[PeakFamilyDetectorFT::NoDataException]") {}
62 };
63
64 private:
65 class Impl;
66 boost::shared_ptr<Impl> impl_;
69};
70
71
72} // namespace analysis
73} // namespace pwiz
74
75
76#endif // _PEAKFAMILYDETECTORFT_HPP_
77
#define PWIZ_API_DECL
Definition Export.hpp:32
FT-specific implementation of PeakFamilyDetector.
PeakFamilyDetectorFT(PeakFamilyDetectorFT &)
PeakFamilyDetectorFT(const Config &config)
virtual void detect(const MZIntensityPair *begin, const MZIntensityPair *end, std::vector< PeakFamily > &result)
find peak families in a specified array of MZIntensityPair
PeakFamilyDetectorFT & operator=(PeakFamilyDetectorFT &)
interface for peak family (isotope envelope) detection
STL namespace.
The data point type of a mass spectrum.
Definition MSData.hpp:423