Class ClassifierFactory

java.lang.Object
edu.msu.cme.rdp.classifier.utils.ClassifierFactory

public class ClassifierFactory extends Object
A factory to create a classifier with the training information defined by the property file.
  • Field Details

  • Method Details

    • resetDefaultDataProp

      public static void resetDefaultDataProp()
      Resets the data property file to the default data property file.
    • setDataProp

      public static void setDataProp(String properties, boolean relative)
      Sets the property file which contains the mapping of the training files. The actually training data files should be in the same directory as this property file. To override the default property location, this method must be called before the first ClassifierFactory.getFactory() call.
    • getFactory

      public static ClassifierFactory getFactory(String gene) throws IOException, TrainingDataException
      Returns a factory with the training information. This method initialize all the training information. Note: the ClassifierFactory.setDataProp() static method must be called before this method if default property file will not be used.
      Throws:
      IOException
      TrainingDataException
    • createClassifier

      public Classifier createClassifier()
      Creates a new classifier.
    • getHierarchyVersion

      public String getHierarchyVersion()
      Returns the version of the taxonomical hierarchy.
    • getHierarchyTrainsetNo

      public HierarchyVersion getHierarchyTrainsetNo()
      Returns the info of the taxonomy hierarchy from of the training file.
    • getClassifierVersion

      public String getClassifierVersion()
      Returns the version of the classifier.
    • getRoot

      public HierarchyTree getRoot()
    • getTrainRank

      public String getTrainRank()