Package edu.msu.cme.rdp.classifier
Class ClassificationResult
java.lang.Object
edu.msu.cme.rdp.classifier.ClassificationResult
This class holds the classification results for a query sequence.
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Constructor Summary
ConstructorsConstructorDescriptionClassificationResult
(edu.msu.cme.rdp.readseq.readers.Sequence p, boolean reverse, List<RankAssignment> a, HierarchyVersion version) Creates a new instance of ClassificationResult. -
Method Summary
Modifier and TypeMethodDescriptionReturns a list of RankAssignments.Returns the version of the taxonomy hierarchy from of the training file.edu.msu.cme.rdp.readseq.readers.Sequence
Returns the query sequenceint
Returns the training set number of the taxonomy hierarchy from of the training file.boolean
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Constructor Details
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ClassificationResult
public ClassificationResult(edu.msu.cme.rdp.readseq.readers.Sequence p, boolean reverse, List<RankAssignment> a, HierarchyVersion version) Creates a new instance of ClassificationResult. This class holds the classification results for a query sequence.
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Method Details
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getSequence
public edu.msu.cme.rdp.readseq.readers.Sequence getSequence()Returns the query sequence -
getAssignments
Returns a list of RankAssignments. The assignments are returned in the order of taxonomic ranks, from the highest to the lowest. -
getTrainsetNo
public int getTrainsetNo()Returns the training set number of the taxonomy hierarchy from of the training file. -
getHierarchyTrainsetNo
Returns the version of the taxonomy hierarchy from of the training file. -
isReverse
public boolean isReverse()
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