Class MCTaxon

java.lang.Object
edu.msu.cme.rdp.taxatree.Node
edu.msu.cme.rdp.taxatree.Taxon
edu.msu.cme.rdp.multicompare.taxon.MCTaxon
Direct Known Subclasses:
UnifracTaxon

public class MCTaxon extends edu.msu.cme.rdp.taxatree.Taxon
  • Field Details

  • Constructor Details

    • MCTaxon

      public MCTaxon(int id, String name, String rank)
    • MCTaxon

      public MCTaxon(int id, String name, String rank, boolean unclassified)
    • MCTaxon

      public MCTaxon(edu.msu.cme.rdp.taxatree.Taxon t)
  • Method Details

    • addSequence

      public void addSequence(String seqid)
    • getSequences

      public Set<String> getSequences()
    • setLineage

      public void setLineage(String lineage)
    • getLineage

      public String getLineage()
    • getSamples

      public Set<MCSample> getSamples()
    • getCount

      public double getCount(MCSample s)
    • getCopyCorrectedCount

      public double getCopyCorrectedCount(MCSample s)
    • incCount

      public void incCount(MCSample s, double c)
    • incCount

      public void incCount(MCSample s, double c, double copyNumber)