Class Reprocess

java.lang.Object
edu.msu.cme.rdp.multicompare.Reprocess

public class Reprocess extends Object
  • Constructor Summary

    Constructors
    Constructor
    Description
     
  • Method Summary

    Modifier and Type
    Method
    Description
    static void
    main(String[] args)
    This class reprocesses the classification results (allrank output) and print out hierarchy output file, based on the confidence cutoff; and print out only the detail classification results with assignment at certain rank with confidence above the cutoff or/and matching a given taxon.
    static HashSet<String>
     

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
  • Constructor Details

    • Reprocess

      public Reprocess()
  • Method Details

    • readTaxonFilterFile

      public static HashSet<String> readTaxonFilterFile(String file) throws IOException
      Throws:
      IOException
    • main

      public static void main(String[] args) throws Exception
      This class reprocesses the classification results (allrank output) and print out hierarchy output file, based on the confidence cutoff; and print out only the detail classification results with assignment at certain rank with confidence above the cutoff or/and matching a given taxon.
      Parameters:
      args -
      Throws:
      Exception