All Classes
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All Classes Interface Summary Class Summary Exception Summary Class Description Alignment Represents an alignment between a Fragment and Reference sub-sequence provides a path to Read and mate AlignmentAlignmentIterator Iterates across a list of AlignmentsErrorMsg A generic NGS error class Holds a message describing what happenedFragment Represents an NGS biological fragmentFragmentIterator Iterates across a list of FragmentsLibDependencies NGS Package Represents the NGS software packagePileup Represents a slice through a stack of Alignments at a given position on the ReferencePileupEvent Represents a single cell of a sparse 2D matrix with Reference coordinates on one axis and stacked Alignments on the other axisPileupEventIterator Iterates across a list of PileupEventsPileupIterator Iterates across a list of PileupsRead ReadCollection Represents an NGS-capable object with a collection of Reads, References and Alignments.ReadGroup Represents an NGS-capable object with a group of ReadsReadGroupIterator Iterates across a list of ReadGroupsReadIterator Reference Represents a reference sequenceReferenceIterator Iterates across a list of ReferencesReferenceSequence Represents a reference sequence standalone objectStatistics Statistical data container