Package ngs
Interface PileupIterator
-
- All Superinterfaces:
Pileup
,PileupEvent
,PileupEventIterator
public interface PileupIterator extends Pileup
Iterates across a list of Pileups
-
-
Field Summary
-
Fields inherited from interface ngs.PileupEvent
alignment_minus_strand, alignment_start, alignment_stop, deletion, insertion, insertion_before_deletion, insertion_before_match, insertion_before_mismatch, intron_minus, intron_plus, intron_unknown, match, mismatch, normal_indel, read_gap, read_overlap, replacement
-
-
Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description boolean
nextPileup()
Advance to first Pileup on initial invocation advance to next Pileup subsequently-
Methods inherited from interface ngs.Pileup
getPileupDepth, getReferenceBase, getReferencePosition, getReferenceSpec
-
Methods inherited from interface ngs.PileupEvent
getAlignmentBase, getAlignmentId, getAlignmentPosition, getAlignmentQuality, getEventIndelType, getEventRepeatCount, getEventType, getFirstAlignmentPosition, getInsertionBases, getInsertionQualities, getLastAlignmentPosition, getMappingQuality
-
Methods inherited from interface ngs.PileupEventIterator
nextPileupEvent, resetPileupEvent
-
-