Package ngs
Interface ReadIterator
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- All Superinterfaces:
Fragment
,FragmentIterator
,Read
public interface ReadIterator extends Read
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Field Summary
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Fields inherited from interface ngs.Read
aligned, all, fullyAligned, partiallyAligned, unaligned
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description boolean
nextRead()
Advance to first Read on initial invocation advance to next Read subsequently-
Methods inherited from interface ngs.Fragment
getFragmentBases, getFragmentBases, getFragmentBases, getFragmentId, getFragmentQualities, getFragmentQualities, getFragmentQualities, isAligned, isPaired
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Methods inherited from interface ngs.FragmentIterator
nextFragment
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Methods inherited from interface ngs.Read
fragmentIsAligned, getNumFragments, getReadBases, getReadBases, getReadBases, getReadCategory, getReadGroup, getReadId, getReadName, getReadQualities, getReadQualities, getReadQualities
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