BIOAWK(1)

NAME
bioawk - extension of awk for biological sequence analysis

DESCRIPTION

  bed:

    1:chrom 2:start 3:end 4:name 5:score 6:strand 7:thickstart 8:thickend 9:rgb 10:blockcount 11:blocksizes 12:blockstarts

  sam:

    1:qname 2:flag 3:rname 4:pos 5:mapq 6:cigar 7:rnext 8:pnext 9:tlen 10:seq 11:qual

  vcf:

    1:chrom 2:pos 3:id 4:ref 5:alt 6:qual 7:filter 8:info

  gff:

    1:seqname 2:source 3:feature 4:start 5:end 6:score 7:filter 8:strand 9:group 10:attribute

  fastx:

    1:name 2:seq 3:qual 4:comment

AUTHOR
 This manpage was written by Nilesh Patra for the Debian distribution and
 can be used for any other usage of the program.